STRINGSTRING
MDS_0325 MDS_0325 cyaY cyaY MDS_0327 MDS_0327 lysA lysA MDS_0322 MDS_0322 dapF dapF MDS_0328 MDS_0328 MDS_1792 MDS_1792 MDS_2088 MDS_2088 MDS_3955 MDS_3955 xerC xerC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
MDS_0325AraC family transcriptional regulator. (348 aa)    
Predicted Functional Partners:
cyaY
Frataxin-like protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.
       0.640
MDS_0327
Hypothetical protein.
       0.609
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.462
MDS_0322
Hypothetical protein.
       0.460
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.460
MDS_0328
Nucleoside diphosphate kinase regulator.
       0.456
MDS_1792
Amino acid adenylation domain-containing protein.
     
 0.442
MDS_2088
Metal-dependent hydrolase-like protein.
  
     0.440
MDS_3955
Metal-dependent hydrolase-like protein.
  
     0.424
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
   0.412
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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