STRINGSTRING
MDS_0334 MDS_0334 MDS_0333 MDS_0333 MDS_0335 MDS_0335 argH argH MDS_0331 MDS_0331 MDS_0332 MDS_0332 MDS_0338 MDS_0338 MDS_1792 MDS_1792 MDS_0339 MDS_0339 MDS_0337 MDS_0337 MDS_0342 MDS_0342
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0334Histone acetyltransferase HPA2-like acetyltransferase. (161 aa)    
Predicted Functional Partners:
MDS_0333
Hypothetical protein.
       0.795
MDS_0335
Hypothetical protein.
       0.719
argH
Argininosuccinate lyase.
     
 0.657
MDS_0331
Hypothetical protein.
       0.592
MDS_0332
Putative lipoprotein.
       0.551
MDS_0338
Sensory transduction protein kinase AlgZ.
       0.522
MDS_1792
Amino acid adenylation domain-containing protein.
     
 0.478
MDS_0339
Two-component response regulator AlgR.
       0.471
MDS_0337
Hypothetical protein.
       0.461
MDS_0342
Protein of unknown function DUF513, HemX.
 
     0.445
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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