STRINGSTRING
MDS_0404 MDS_0404 potA potA MDS_0408 MDS_0408 MDS_0407 MDS_0407 MDS_0405 MDS_0405 MDS_4656 MDS_4656 MDS_4524 MDS_4524 MDS_4338 MDS_4338 MDS_4657 MDS_4657 MDS_4523 MDS_4523 MDS_4339 MDS_4339
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0404Extracellular solute-binding protein. (365 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.991
MDS_0408
Ornithine carbamoyltransferase.
 
 0.991
MDS_0407
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.984
MDS_0405
Extracellular solute-binding protein.
 
 
 
0.962
MDS_4656
Ornithine carbamoyltransferase.
  
 0.940
MDS_4524
Binding-protein-dependent transport systems inner membrane component.
  
 0.875
MDS_4338
Binding-protein-dependent transport systems inner membrane component.
  
 0.872
MDS_4657
Polyamine ABC transporter permease PotB.
 
  
 0.869
MDS_4523
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.826
MDS_4339
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.780
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
Server load: low (24%) [HD]