STRINGSTRING
MDS_0421 MDS_0421 rimK rimK MDS_0423 MDS_0423 MDS_4099 MDS_4099 MDS_0424 MDS_0424 rlpA-2 rlpA-2 dacB dacB rlpA rlpA dapF dapF MDS_4111 MDS_4111
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0421Peptidase U61, LD-carboxypeptidase A. (298 aa)    
Predicted Functional Partners:
rimK
SSU ribosomal protein S6P modification protein; Belongs to the RimK family.
       0.800
MDS_0423
Hypothetical protein.
       0.800
MDS_4099
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.598
MDS_0424
RNA-binding S4 domain-containing protein; Belongs to the HSP15 family.
       0.593
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.510
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
   
 0.497
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 
 0.496
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
   
 0.440
MDS_4111
Phosphoesterase, PA-phosphatase related protein.
  
    0.416
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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