STRINGSTRING
pleD_11 pleD_11 MDS_0464 MDS_0464 MDS_0465 MDS_0465 MDS_0469 MDS_0469 MDS_0467 MDS_0467 MDS_3028 MDS_3028 MDS_3170 MDS_3170 MDS_4622 MDS_4622 walR walR MDS_1948 MDS_1948 MDS_1054 MDS_1054
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleD_11Response regulator receiver protein. (121 aa)    
Predicted Functional Partners:
MDS_0464
Putative CheW protein.
 
 
 0.991
MDS_0465
Methyl-accepting chemotaxis sensory transducer.
 
 0.989
MDS_0469
Putative CheW protein.
 
  
 0.975
MDS_0467
CheA signal transduction histidine kinase.
 
0.965
MDS_3028
Putative adenylate/guanylate cyclase.
 
 
 0.933
MDS_3170
Integral membrane sensor hybrid histidine protein kinase.
 
 
 0.931
MDS_4622
PAS/PAC sensor signal transduction histidine kinase.
 
 0.895
walR
Response regulator receiver protein.
 
  
0.870
MDS_1948
Diguanylate cyclase.
 
 
    0.859
MDS_1054
Sensor protein PilS.
 
 
 0.826
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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