STRINGSTRING
MDS_0485 MDS_0485 MDS_4570 MDS_4570 MDS_2562 MDS_2562 MDS_1574 MDS_1574 MDS_3268 MDS_3268 MDS_0669 MDS_0669 MDS_0881 MDS_0881 MDS_4617 MDS_4617 MDS_0483 MDS_0483 MDS_4647 MDS_4647 MDS_0482 MDS_0482
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0485Cytochrome c556-like protein. (149 aa)    
Predicted Functional Partners:
MDS_4570
Hypothetical protein.
  
    0.693
MDS_2562
Hypothetical protein.
  
     0.691
MDS_1574
Hypothetical protein.
  
    0.628
MDS_3268
Membrane protein-like protein.
 
     0.580
MDS_0669
LmbE family protein.
  
     0.576
MDS_0881
Membrane protein-like protein.
  
     0.575
MDS_4617
Outer membrane porin.
  
     0.570
MDS_0483
Putative chemotaxis transducer.
       0.563
MDS_4647
Outer membrane porin.
  
     0.535
MDS_0482
Membrane protein-like protein.
 
    0.530
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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