Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0565 | MDS_0566 | MDS_0565 | MDS_0566 | TetR family transcriptional regulator. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.604 |
MDS_0565 | phaZ | MDS_0565 | MDS_0567 | TetR family transcriptional regulator. | Poly(3-hydroxyalkanoate) depolymerase. | 0.487 |
MDS_0566 | MDS_0565 | MDS_0566 | MDS_0565 | poly(R)-hydroxyalkanoic acid synthase, class II. | TetR family transcriptional regulator. | 0.604 |
MDS_0566 | MDS_0568 | MDS_0566 | MDS_0568 | poly(R)-hydroxyalkanoic acid synthase, class II. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.931 |
MDS_0566 | MDS_1551 | MDS_0566 | MDS_1551 | poly(R)-hydroxyalkanoic acid synthase, class II. | Dehydratase. | 0.935 |
MDS_0566 | MDS_2116 | MDS_0566 | MDS_2116 | poly(R)-hydroxyalkanoic acid synthase, class II. | Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase. | 0.923 |
MDS_0566 | fadB | MDS_0566 | MDS_1633 | poly(R)-hydroxyalkanoic acid synthase, class II. | Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.923 |
MDS_0566 | phaZ | MDS_0566 | MDS_0567 | poly(R)-hydroxyalkanoic acid synthase, class II. | Poly(3-hydroxyalkanoate) depolymerase. | 0.823 |
MDS_0568 | MDS_0566 | MDS_0568 | MDS_0566 | poly(R)-hydroxyalkanoic acid synthase, class II. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.931 |
MDS_0568 | MDS_1551 | MDS_0568 | MDS_1551 | poly(R)-hydroxyalkanoic acid synthase, class II. | Dehydratase. | 0.935 |
MDS_0568 | MDS_2116 | MDS_0568 | MDS_2116 | poly(R)-hydroxyalkanoic acid synthase, class II. | Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase. | 0.923 |
MDS_0568 | fadB | MDS_0568 | MDS_1633 | poly(R)-hydroxyalkanoic acid synthase, class II. | Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.923 |
MDS_0568 | phaZ | MDS_0568 | MDS_0567 | poly(R)-hydroxyalkanoic acid synthase, class II. | Poly(3-hydroxyalkanoate) depolymerase. | 0.868 |
MDS_1551 | MDS_0566 | MDS_1551 | MDS_0566 | Dehydratase. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.935 |
MDS_1551 | MDS_0568 | MDS_1551 | MDS_0568 | Dehydratase. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.935 |
MDS_1551 | MDS_2116 | MDS_1551 | MDS_2116 | Dehydratase. | Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase. | 0.957 |
MDS_1551 | fadB | MDS_1551 | MDS_1633 | Dehydratase. | Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.957 |
MDS_2116 | MDS_0566 | MDS_2116 | MDS_0566 | Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.923 |
MDS_2116 | MDS_0568 | MDS_2116 | MDS_0568 | Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase. | poly(R)-hydroxyalkanoic acid synthase, class II. | 0.923 |
MDS_2116 | MDS_1551 | MDS_2116 | MDS_1551 | Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase. | Dehydratase. | 0.957 |
page 1 of 2