STRINGSTRING
MDS_0566 MDS_0566 MDS_1551 MDS_1551 MDS_0568 MDS_0568 fadB fadB MDS_2116 MDS_2116 phaZ phaZ MDS_0565 MDS_0565
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
MDS_0566poly(R)-hydroxyalkanoic acid synthase, class II. (560 aa)    
Predicted Functional Partners:
MDS_1551
Dehydratase.
 
  
 0.935
MDS_0568
poly(R)-hydroxyalkanoic acid synthase, class II.
 
 
 
0.931
fadB
Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.923
MDS_2116
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase.
     
 0.923
phaZ
Poly(3-hydroxyalkanoate) depolymerase.
 
  
 0.823
MDS_0565
TetR family transcriptional regulator.
  
    0.604
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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