Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0643 | msrA | MDS_0643 | MDS_0644 | Hypothetical protein. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.767 |
MDS_1574 | dsbD | MDS_1574 | MDS_0803 | Hypothetical protein. | Thiol:disulfide interchange protein precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.642 |
MDS_1574 | msrA | MDS_1574 | MDS_0644 | Hypothetical protein. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.744 |
MDS_1574 | msrB | MDS_1574 | MDS_2242 | Hypothetical protein. | Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family. | 0.493 |
MDS_1888 | MDS_3261 | MDS_1888 | MDS_3261 | Periplasmic protein thiol--disulfide oxidoreductase DsbE. | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | 0.565 |
MDS_1888 | dsbD | MDS_1888 | MDS_0803 | Periplasmic protein thiol--disulfide oxidoreductase DsbE. | Thiol:disulfide interchange protein precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.842 |
MDS_1888 | msrA | MDS_1888 | MDS_0644 | Periplasmic protein thiol--disulfide oxidoreductase DsbE. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.763 |
MDS_1888 | msrB | MDS_1888 | MDS_2242 | Periplasmic protein thiol--disulfide oxidoreductase DsbE. | Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family. | 0.536 |
MDS_2659 | dsbD | MDS_2659 | MDS_0803 | Hypothetical protein. | Thiol:disulfide interchange protein precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.739 |
MDS_2659 | msrA | MDS_2659 | MDS_0644 | Hypothetical protein. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.763 |
MDS_2659 | msrB | MDS_2659 | MDS_2242 | Hypothetical protein. | Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family. | 0.536 |
MDS_3261 | MDS_1888 | MDS_3261 | MDS_1888 | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | Periplasmic protein thiol--disulfide oxidoreductase DsbE. | 0.565 |
MDS_3261 | MDS_4055 | MDS_3261 | MDS_4055 | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | Redoxin domain-containing protein. | 0.656 |
MDS_3261 | dsbD | MDS_3261 | MDS_0803 | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | Thiol:disulfide interchange protein precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.830 |
MDS_3261 | msrA | MDS_3261 | MDS_0644 | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.763 |
MDS_3261 | msrB | MDS_3261 | MDS_2242 | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family. | 0.536 |
MDS_4055 | MDS_3261 | MDS_4055 | MDS_3261 | Redoxin domain-containing protein. | Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen. | 0.656 |
MDS_4055 | dsbD | MDS_4055 | MDS_0803 | Redoxin domain-containing protein. | Thiol:disulfide interchange protein precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.767 |
MDS_4055 | msrA | MDS_4055 | MDS_0644 | Redoxin domain-containing protein. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.833 |
MDS_4055 | msrB | MDS_4055 | MDS_2242 | Redoxin domain-containing protein. | Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family. | 0.664 |
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