STRINGSTRING
MDS_0669 MDS_0669 MDS_0668 MDS_0668 msbA msbA MDS_1347 MDS_1347 MDS_0333 MDS_0333 MDS_0673 MDS_0673 MDS_4617 MDS_4617 MDS_1077 MDS_1077 MDS_2562 MDS_2562 MDS_4647 MDS_4647 MDS_1194 MDS_1194
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0669LmbE family protein. (460 aa)    
Predicted Functional Partners:
MDS_0668
Mig-14 family protein.
  
  
 0.879
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
     0.825
MDS_1347
Hypothetical protein.
  
   
 0.773
MDS_0333
Hypothetical protein.
  
     0.769
MDS_0673
Hypothetical protein.
  
     0.765
MDS_4617
Outer membrane porin.
  
     0.764
MDS_1077
Carbohydrate-binding and sugar hydrolysis.
 
     0.762
MDS_2562
Hypothetical protein.
 
     0.761
MDS_4647
Outer membrane porin.
  
     0.761
MDS_1194
Outer membrane porin.
  
     0.749
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.