STRINGSTRING
MDS_0841 MDS_0841 MDS_0842 MDS_0842 MDS_0843 MDS_0843 MDS_1792 MDS_1792 MDS_0697 MDS_0697 cmoM cmoM MDS_0845 MDS_0845 MDS_1790 MDS_1790 MDS_3858 MDS_3858 MDS_3860 MDS_3860 rnc rnc
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0841GCN5-related N-acetyltransferase. (160 aa)    
Predicted Functional Partners:
MDS_0842
Hypothetical protein.
       0.768
MDS_0843
Hypothetical protein.
       0.718
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.635
MDS_0697
HdoD.
  
     0.619
cmoM
Methyltransferase type 11; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
       0.561
MDS_0845
Hypothetical protein.
       0.556
MDS_1790
Lysine/ornithine N-monooxygenase-like protein.
  
  
 0.537
MDS_3858
Hypothetical protein.
  
     0.534
MDS_3860
Hypothetical protein.
 
     0.523
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.516
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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