STRINGSTRING
MDS_0913 MDS_0913 MDS_2662 MDS_2662 MDS_2495 MDS_2495 MDS_1141 MDS_1141 arcA arcA MDS_0912 MDS_0912 MDS_0914 MDS_0914 MDS_4260 MDS_4260 MDS_0087 MDS_0087 MDS_3500 MDS_3500 MDS_3512 MDS_3512
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_09133-beta hydroxysteroid dehydrogenase/isomerase. (213 aa)    
Predicted Functional Partners:
MDS_2662
Acetyltransferase-like protein.
  
    0.818
MDS_2495
Hypothetical protein.
   
    0.786
MDS_1141
NAD-dependent epimerase/dehydratase.
   
    0.751
arcA
Arginine deiminase.
   
    0.740
MDS_0912
Hypothetical protein.
       0.656
MDS_0914
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.649
MDS_4260
Transcription regulator protein.
 
  
 0.567
MDS_0087
Aldo/keto reductase.
 
  
 0.548
MDS_3500
3-demethylubiquinone-9 3-methyltransferase.
   
    0.531
MDS_3512
HxlR family transcriptional regulator.
  
  
 0.502
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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