STRINGSTRING
MDS_0919 MDS_0919 MDS_0917 MDS_0917 MDS_1376 MDS_1376 MDS_2494 MDS_2494 MDS_4556 MDS_4556 MDS_2096 MDS_2096 cueR cueR MDS_0918 MDS_0918 MDS_2721 MDS_2721 rplN rplN MDS_1301 MDS_1301
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_0919Heavy metal transport/detoxification protein. (65 aa)    
Predicted Functional Partners:
MDS_0917
Heavy metal translocating P-type ATPase.
 
 
 0.885
MDS_1376
Superoxide dismutase, copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.845
MDS_2494
Copper-translocating P-type ATPase.
 
 
 0.782
MDS_4556
Heavy metal translocating P-type ATPase.
 
 
 0.767
MDS_2096
Heavy metal translocating P-type ATPase.
 
 
 0.755
cueR
MerR family transcriptional regulator.
 
  
 0.669
MDS_0918
Hypothetical protein.
       0.595
MDS_2721
MerR family transcriptional regulator.
 
  
 0.477
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.468
MDS_1301
Ferritin, Dps family protein; Belongs to the Dps family.
  
  
 0.410
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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