STRINGSTRING
MDS_0938 MDS_0938 pcaD pcaD MDS_4158 MDS_4158 MDS_1329 MDS_1329 catC catC pcaC pcaC pcaH pcaH MDS_0939 MDS_0939 pcaG pcaG MDS_1792 MDS_1792 rlpA rlpA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_09384-carboxymuconolactone decarboxylase. (129 aa)    
Predicted Functional Partners:
pcaD
3-oxoadipate enol-lacton hydrolase.
 
 0.994
MDS_4158
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.977
MDS_1329
3-oxoadipate enol-lactonase.
 
 
 0.939
catC
Muconolactone delta-isomerase.
    
 0.915
pcaC
4-carboxymuconolactone decarboxylase.
  
  
 
0.906
pcaH
Protocatechuate 3,4-dioxygenase.
 
  
 0.809
MDS_0939
CaCA family Na(+)/Ca(+) antiporter.
       0.800
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.760
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.595
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.593
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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