Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MDS_0588 | MDS_0958 | MDS_0588 | MDS_0958 | Transcriptional regulatory protein. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.858 |
| MDS_0958 | MDS_0588 | MDS_0958 | MDS_0588 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulatory protein. | 0.858 |
| MDS_0958 | MDS_1053 | MDS_0958 | MDS_1053 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component response regulator PilR. | 0.959 |
| MDS_0958 | MDS_1054 | MDS_0958 | MDS_1054 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sensor protein PilS. | 0.909 |
| MDS_0958 | MDS_1845 | MDS_0958 | MDS_1845 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sigma-54 dependent transcription regulator. | 0.826 |
| MDS_0958 | MDS_2141 | MDS_0958 | MDS_2141 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Fis family GAF modulated sigma54 specific transcriptional regulator. | 0.827 |
| MDS_0958 | MDS_2405 | MDS_0958 | MDS_2405 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anaerobic nitric oxide reductase transcription regulator. | 0.823 |
| MDS_0958 | MDS_2678 | MDS_0958 | MDS_2678 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Fis family GAF modulated sigma54 specific transcriptional regulator. | 0.829 |
| MDS_0958 | MDS_3842 | MDS_0958 | MDS_3842 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anaerobic nitric oxide reductase transcription regulator. | 0.822 |
| MDS_0958 | ntrC | MDS_0958 | MDS_4469 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Nitrogen metabolism transcriptional regulator, NtrC, fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.824 |
| MDS_0958 | rpoA | MDS_0958 | MDS_4268 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
| MDS_1053 | MDS_0958 | MDS_1053 | MDS_0958 | Two-component response regulator PilR. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.959 |
| MDS_1053 | MDS_1054 | MDS_1053 | MDS_1054 | Two-component response regulator PilR. | Sensor protein PilS. | 0.993 |
| MDS_1054 | MDS_0958 | MDS_1054 | MDS_0958 | Sensor protein PilS. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.909 |
| MDS_1054 | MDS_1053 | MDS_1054 | MDS_1053 | Sensor protein PilS. | Two-component response regulator PilR. | 0.993 |
| MDS_1845 | MDS_0958 | MDS_1845 | MDS_0958 | Sigma-54 dependent transcription regulator. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.826 |
| MDS_2141 | MDS_0958 | MDS_2141 | MDS_0958 | Fis family GAF modulated sigma54 specific transcriptional regulator. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.827 |
| MDS_2405 | MDS_0958 | MDS_2405 | MDS_0958 | Anaerobic nitric oxide reductase transcription regulator. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.823 |
| MDS_2678 | MDS_0958 | MDS_2678 | MDS_0958 | Fis family GAF modulated sigma54 specific transcriptional regulator. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.829 |
| MDS_3842 | MDS_0958 | MDS_3842 | MDS_0958 | Anaerobic nitric oxide reductase transcription regulator. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.822 |
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