STRINGSTRING
MDS_1060 MDS_1060 MDS_1278 MDS_1278 MDS_2330 MDS_2330 MDS_0639 MDS_0639 MDS_2227 MDS_2227 MDS_3526 MDS_3526 MDS_1143 MDS_1143 MDS_2228 MDS_2228 MDS_3666 MDS_3666 MDS_1059 MDS_1059 MDS_3141 MDS_3141
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1060NADH:flavin oxidoreductase/NADH oxidase. (369 aa)    
Predicted Functional Partners:
MDS_1278
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.856
MDS_2330
acyl-CoA dehydrogenase domain-containing protein.
  
 
 0.823
MDS_0639
acyl-CoA dehydrogenase domain-containing protein.
 
 
 0.814
MDS_2227
Short chain dehydrogenase.
  
  
 0.780
MDS_3526
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
  
 0.780
MDS_1143
Major facilitator transporter.
  
    0.779
MDS_2228
Aminoglycoside phosphotransferase.
  
    0.777
MDS_3666
Molybdopterin dinucleotide-binding region.
  
    0.763
MDS_1059
TetR family transcriptional regulator.
  
  
 0.731
MDS_3141
Short-chain dehydrogenase/reductase SDR.
 
  
 0.603
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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