STRINGSTRING
MDS_1067 MDS_1067 MDS_1068 MDS_1068 MDS_1069 MDS_1069 MDS_3478 MDS_3478 MDS_3564 MDS_3564 MDS_2359 MDS_2359 MDS_1070 MDS_1070
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1067SMC domain-containing protein. (386 aa)    
Predicted Functional Partners:
MDS_1068
Hypothetical protein.
       0.732
MDS_1069
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.707
MDS_3478
GCN5-related N-acetyltransferase.
   
    0.526
MDS_3564
Hypothetical protein.
   
    0.526
MDS_2359
Hypothetical protein.
  
     0.522
MDS_1070
Hypothetical protein.
       0.400
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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