STRINGSTRING
MDS_1256 MDS_1256 MDS_1257 MDS_1257 garD garD MDS_1254 MDS_1254 MDS_0216 MDS_0216 MDS_0258 MDS_0258 MDS_1792 MDS_1792 nuoC nuoC MDS_2012 MDS_2012 MDS_2011 MDS_2011 lldD lldD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1256FAD linked oxidase domain protein. (472 aa)    
Predicted Functional Partners:
MDS_1257
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein.
 
 
 
 0.827
garD
Galactarate dehydratase.
       0.798
MDS_1254
D-galactonate transporter.
  
  
 0.750
MDS_0216
Glycolate oxidase FAD binding subunit.
 
     0.636
MDS_0258
(S)-mandelate dehydrogenase.
 
 0.620
MDS_1792
Amino acid adenylation domain-containing protein.
  
 
 0.614
nuoC
Bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.613
MDS_2012
Electron transfer flavoprotein, alpha subunit.
 
 
 0.602
MDS_2011
Electron transfer flavoprotein beta-subunit.
 
 
 0.593
lldD
L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain.
  
 0.538
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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