STRINGSTRING
MDS_1260 MDS_1260 MDS_1077 MDS_1077 MDS_1766 MDS_1766 MDS_1079 MDS_1079 MDS_1508 MDS_1508 MDS_1017 MDS_1017 MDS_1075 MDS_1075 MDS_4783 MDS_4783 MDS_1347 MDS_1347 MDS_1076 MDS_1076 lon lon
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1260Secreted protein-like protein. (130 aa)    
Predicted Functional Partners:
MDS_1077
Carbohydrate-binding and sugar hydrolysis.
  
     0.727
MDS_1766
Alginate biosynthesis transcriptional activator.
  
     0.721
MDS_1079
Sel1 domain-containing protein.
  
     0.719
MDS_1508
Membrane protein-like protein.
  
     0.707
MDS_1017
Hypothetical protein.
  
     0.685
MDS_1075
poly(beta-D-mannuronate) lyase.
  
     0.663
MDS_4783
Hypothetical protein.
  
     0.659
MDS_1347
Hypothetical protein.
  
     0.645
MDS_1076
Hypothetical protein.
  
     0.621
lon
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
 
   
 0.607
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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