STRINGSTRING
MDS_1296 MDS_1296 MDS_0669 MDS_0669 MDS_0933 MDS_0933 MDS_1032 MDS_1032 MDS_1031 MDS_1031 MDS_1639 MDS_1639 MDS_4570 MDS_4570 MDS_2562 MDS_2562 tolA tolA MDS_3276 MDS_3276 MDS_1574 MDS_1574
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1296Outer membrane porin. (434 aa)    
Predicted Functional Partners:
MDS_0669
LmbE family protein.
  
     0.686
MDS_0933
Hypothetical protein.
  
     0.673
MDS_1032
Hypothetical protein.
  
     0.634
MDS_1031
Hypothetical protein.
  
     0.605
MDS_1639
SOS cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.
  
     0.583
MDS_4570
Hypothetical protein.
  
     0.580
MDS_2562
Hypothetical protein.
  
     0.571
tolA
TonB family protein.
  
     0.565
MDS_3276
Hypothetical protein.
  
     0.548
MDS_1574
Hypothetical protein.
  
     0.545
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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