STRINGSTRING
MDS_1317 MDS_1317 MDS_1318 MDS_1318 sdhB sdhB sdhC sdhC MDS_2258 MDS_2258 MDS_1962 MDS_1962
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1317Hypothetical protein. (357 aa)    
Predicted Functional Partners:
MDS_1318
Beta-lactamase domain-containing protein.
  
    0.777
sdhB
Succinate dehydrogenase iron-sulfur subunit.
    
  0.509
sdhC
Succinate dehydrogenase subunit C.
     
  0.499
MDS_2258
Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.499
MDS_1962
Beta-lactamase domain-containing protein.
  
    0.467
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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