STRINGSTRING
MDS_1330 MDS_1330 MDS_1329 MDS_1329 MDS_1328 MDS_1328 MDS_4387 MDS_4387 MDS_1198 MDS_1198 MDS_1062 MDS_1062 cysB cysB MDS_3172 MDS_3172 MDS_0312 MDS_0312 MDS_4877 MDS_4877 MDS_0490 MDS_0490
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1330LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
MDS_1329
3-oxoadipate enol-lactonase.
  
  
 0.884
MDS_1328
Peptidyl-prolyl cis-trans isomerase, cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  
 0.803
MDS_4387
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.611
MDS_1198
LysR family transcriptional regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.496
MDS_1062
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.493
cysB
Transcriptional regulator CysB; Belongs to the LysR transcriptional regulatory family.
  
    0.482
MDS_3172
Transcriptional regulator, LysR family.
  
     0.457
MDS_0312
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.455
MDS_4877
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.455
MDS_0490
LysR family transcriptional regulator.
  
     0.449
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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