STRINGSTRING
MDS_1388 MDS_1388 MDS_1387 MDS_1387 MDS_1389 MDS_1389 MDS_1792 MDS_1792 uca uca MDS_1386 MDS_1386
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1388Hypothetical protein. (68 aa)    
Predicted Functional Partners:
MDS_1387
Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
  
    0.850
MDS_1389
Diguanylate cyclase.
       0.800
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.752
uca
Biotin carboxylation domain-containing protein.
  
    0.495
MDS_1386
Alpha/beta hydrolase fold protein.
     
 0.466
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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