STRINGSTRING
MDS_1421 MDS_1421 MDS_1422 MDS_1422 MDS_3043 MDS_3043 MDS_1426 MDS_1426 MDS_3047 MDS_3047 MDS_3046 MDS_3046 MDS_1425 MDS_1425 MDS_1427 MDS_1427 MDS_3048 MDS_3048 MDS_1423 MDS_1423 MDS_3045 MDS_3045
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1421Hypothetical protein. (212 aa)    
Predicted Functional Partners:
MDS_1422
Diguanylate cyclase/phosphodiesterase.
 
 
 0.965
MDS_3043
Diguanylate cyclase/phosphodiesterase.
 
 
 0.863
MDS_1426
ABC transporter-like protein.
 
  
 0.814
MDS_3047
ABC transporter related protein.
 
  
 0.813
MDS_3046
TolC family type I secretion outer membrane protein.
 
   
 0.804
MDS_1425
Agglutination protein.
 
   
 0.803
MDS_1427
Type I secretion membrane fusion protein, HlyD.
 
  
 0.801
MDS_3048
HlyD family type I secretion membrane fusion protein.
 
  
 0.801
MDS_1423
Hypothetical protein.
 
     0.752
MDS_3045
Hemolysin-type calcium-binding repeat-containing protein.
 
   
 0.726
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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