STRINGSTRING
mmsB mmsB MDS_1429 MDS_1429 mmsA mmsA MDS_1431 MDS_1431 mmsA-2 mmsA-2 MDS_1430 MDS_1430 MDS_0286 MDS_0286 MDS_0938 MDS_0938 pcaC pcaC MDS_2692 MDS_2692 MDS_2861 MDS_2861
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmsB3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (293 aa)    
Predicted Functional Partners:
MDS_1429
enoyl-CoA hydratase/isomerase.
  
 0.961
mmsA
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.868
MDS_1431
acyl-CoA dehydrogenase domain-containing protein.
 
  
 0.768
mmsA-2
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.732
MDS_1430
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.697
MDS_0286
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.499
MDS_0938
4-carboxymuconolactone decarboxylase.
 
  
 0.497
pcaC
4-carboxymuconolactone decarboxylase.
 
  
 0.495
MDS_2692
hydroxymethylglutaryl-CoA lyase.
 
  
 0.489
MDS_2861
enoyl-CoA hydratase-isomerase.
  
  
 0.424
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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