STRINGSTRING
MDS_1457 MDS_1457 MDS_1456 MDS_1456 MDS_1458 MDS_1458 MDS_1454 MDS_1454 MDS_1455 MDS_1455 MDS_1453 MDS_1453 MDS_3934 MDS_3934 nth nth MDS_0448 MDS_0448 MDS_2626 MDS_2626 metG metG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
MDS_1457Electron transport complex protein RnfB. (191 aa)    
Predicted Functional Partners:
MDS_1456
Electron transport complex protein RnfC.
 
 0.997
MDS_1458
Na(+)-translocating NADH-quinone reductase subunit E.
 
 
 0.993
MDS_1454
Electron transport complex, RnfABCDGE type, G subunit.
 
 
 0.977
MDS_1455
Electron transport complex, RnfABCDGE type, D subunit.
 
 
 0.974
MDS_1453
Electron transport complex RsxE subunit.
 
 
 0.973
MDS_3934
Hypothetical protein.
 
   
 0.835
nth
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.673
MDS_0448
Formate dehydrogenase, alpha subunit.
   
 
 0.669
MDS_2626
Assimilatory nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 
 0.669
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.645
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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