STRINGSTRING
MDS_1471 MDS_1471 MDS_1472 MDS_1472 MDS_1473 MDS_1473 MDS_1654 MDS_1654 MDS_3662 MDS_3662 MDS_2967 MDS_2967 MDS_4814 MDS_4814 MDS_1763 MDS_1763 MDS_1470 MDS_1470 MDS_3346 MDS_3346 MDS_1474 MDS_1474
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1471Hypothetical protein. (154 aa)    
Predicted Functional Partners:
MDS_1472
Preprotein translocase subunit SecA.
       0.800
MDS_1473
Water stress/hypersensitive response protein.
       0.763
MDS_1654
Hypothetical protein.
  
     0.760
MDS_3662
Hypothetical protein.
  
     0.668
MDS_2967
Anti-sigma-factor antagonist.
  
     0.653
MDS_4814
Nucleic acid binding protein.
  
     0.641
MDS_1763
Sodium pump decarboxylase, gamma subunit.
  
     0.581
MDS_1470
Penicillin amidase.
       0.580
MDS_3346
Hypothetical protein.
  
     0.574
MDS_1474
Hypothetical protein.
 
     0.539
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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