STRINGSTRING
MDS_1490 MDS_1490 pal pal tolB tolB pdxH pdxH MDS_1489 MDS_1489 MDS_0015 MDS_0015 MDS_3321 MDS_3321 MDS_1448 MDS_1448 MDS_1875 MDS_1875 MDS_2216 MDS_2216 MDS_3950 MDS_3950
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1490OmpA/MotB domain-containing protein. (217 aa)    
Predicted Functional Partners:
pal
OmpA domain-containing protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.639
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.632
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.604
MDS_1489
Beta-lactamase.
       0.581
MDS_0015
Hypothetical protein.
 
 
 0.566
MDS_3321
Outer membrane chaperone Skp.
 
 
 0.534
MDS_1448
OmpA/MotB domain-containing protein.
  
     0.531
MDS_1875
Flagellar motor protein MotD.
  
 
 0.524
MDS_2216
Lytic transglycosylase, catalytic.
 
 
 
 0.503
MDS_3950
Multi-sensor hybrid histidine kinase.
  
 
 0.469
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.