STRINGSTRING
MDS_1497 MDS_1497 MDS_1123 MDS_1123 bamA bamA MDS_3278 MDS_3278 MDS_3191 MDS_3191 MDS_1496 MDS_1496 MDS_3254 MDS_3254 MDS_3321 MDS_3321 MDS_1498 MDS_1498 bamE bamE MDS_3279 MDS_3279
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_149717 kDa surface antigen. (153 aa)    
Predicted Functional Partners:
MDS_1123
Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
  
 0.746
bamA
Surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.682
MDS_3278
Protein of unknown function DUF883, ElaB.
  
    0.618
MDS_3191
Hypothetical protein.
  
  
 0.572
MDS_1496
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
       0.565
MDS_3254
Hypothetical protein.
   
  
 0.545
MDS_3321
Outer membrane chaperone Skp.
  
  
 0.525
MDS_1498
Putative monovalent cation/H+ antiporter subunit A.
       0.523
bamE
SmpA/OmlA domain-containing protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.492
MDS_3279
Membrane protein-like protein.
  
    0.484
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.