STRINGSTRING
MDS_1514 MDS_1514 MDS_1513 MDS_1513 MDS_0669 MDS_0669 MDS_0333 MDS_0333 MDS_1511 MDS_1511 MDS_0933 MDS_0933 MDS_1347 MDS_1347 MDS_2982 MDS_2982 MDS_1512 MDS_1512 MDS_2562 MDS_2562 MDS_4570 MDS_4570
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1514Outer membrane porin. (422 aa)    
Predicted Functional Partners:
MDS_1513
Hypothetical protein.
  
    0.835
MDS_0669
LmbE family protein.
  
     0.731
MDS_0333
Hypothetical protein.
  
     0.675
MDS_1511
Hypothetical protein.
  
    0.674
MDS_0933
Hypothetical protein.
  
     0.662
MDS_1347
Hypothetical protein.
  
     0.653
MDS_2982
Hypothetical protein.
  
     0.645
MDS_1512
Hypothetical protein.
  
    0.644
MDS_2562
Hypothetical protein.
  
     0.641
MDS_4570
Hypothetical protein.
  
     0.638
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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