STRINGSTRING
rpoE rpoE MDS_1524 MDS_1524 MDS_1525 MDS_1525 MDS_1792 MDS_1792 MDS_1526 MDS_1526 rpoC rpoC rpoB rpoB MDS_1527 MDS_1527 MDS_1614 MDS_1614 MDS_1459 MDS_1459 recO recO
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoERNA polymerase sigma factor AlgU; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)    
Predicted Functional Partners:
MDS_1524
Anti sigma-E protein, RseA.
 
 
 0.979
MDS_1525
Sigma E regulatory protein, MucB/RseB.
 
 
 0.849
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.589
MDS_1526
Positive regulator of sigma E, RseC/MucC.
  
  
 0.575
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.554
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.550
MDS_1527
Protease Do; Belongs to the peptidase S1C family.
     
 0.549
MDS_1614
Hypothetical protein.
  
 
 0.504
MDS_1459
Putative lipoprotein.
  
 
 0.503
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.486
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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