STRINGSTRING
MDS_1590 MDS_1590 MDS_0617 MDS_0617 MDS_1879 MDS_1879 MDS_1589 MDS_1589 MDS_1591 MDS_1591 MDS_1659 MDS_1659 fliO fliO MDS_0498 MDS_0498 MDS_1637 MDS_1637 MDS_1425 MDS_1425 MDS_2554 MDS_2554
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1590Hypothetical protein. (174 aa)    
Predicted Functional Partners:
MDS_0617
Hypothetical protein.
  
     0.583
MDS_1879
Hypothetical protein.
  
     0.524
MDS_1589
AraC family transcriptional regulator.
       0.511
MDS_1591
Hypothetical protein.
       0.457
MDS_1659
Type IV pilus assembly PilZ.
  
     0.442
fliO
Flagellar biosynthesis protein, FliO.
  
     0.437
MDS_0498
Hypothetical protein.
  
     0.421
MDS_1637
Hypothetical protein.
  
     0.414
MDS_1425
Agglutination protein.
  
     0.406
MDS_2554
Hypothetical protein.
  
     0.404
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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