STRINGSTRING
gspF gspF gspE gspE gspG gspG gspI gspI pilB pilB MDS_4614 MDS_4614 gspH gspH MDS_0773 MDS_0773 gspD gspD MDS_0885 MDS_0885 gspJ gspJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspFGeneral secretion pathway protein F. (405 aa)    
Predicted Functional Partners:
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.978
gspG
General secretion pathway protein G.
 
  
 0.971
gspI
General secretion pathway protein I.
 
  
 0.962
pilB
Type IV-A pilus assembly ATPase PilB.
 
 
 0.956
MDS_4614
Type II secretion system protein E.
 
 
 0.948
gspH
General secretion pathway protein H.
 
  
 0.939
MDS_0773
Type II secretion system protein.
  
  
 
0.929
gspD
General secretion pathway protein D.
 
  
 0.907
MDS_0885
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.892
gspJ
General secretion pathway protein J.
 
  
 0.857
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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