STRINGSTRING
gspH gspH gspJ gspJ gspI gspI MDS_1738 MDS_1738 gspG gspG gspF gspF gspL gspL gspE gspE MDS_1740 MDS_1740 gspD gspD pilB pilB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspHGeneral secretion pathway protein H. (173 aa)    
Predicted Functional Partners:
gspJ
General secretion pathway protein J.
 
 
 0.977
gspI
General secretion pathway protein I.
 
  
 0.970
MDS_1738
General secretion pathway protein K.
 
 
 0.963
gspG
General secretion pathway protein G.
 
  
 0.961
gspF
General secretion pathway protein F.
 
  
 0.939
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.916
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.886
MDS_1740
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.867
gspD
General secretion pathway protein D.
 
  
 0.819
pilB
Type IV-A pilus assembly ATPase PilB.
  
 
 0.742
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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