Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_1752 | MDS_1754 | MDS_1752 | MDS_1754 | Hypothetical protein. | L-threonine aldolase. | 0.506 |
MDS_1752 | argD | MDS_1752 | MDS_1558 | Hypothetical protein. | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.424 |
MDS_1752 | argD-2 | MDS_1752 | MDS_1747 | Hypothetical protein. | Bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.552 |
MDS_1752 | aruF | MDS_1752 | MDS_1748 | Hypothetical protein. | Arginine succinyltransferase. | 0.535 |
MDS_1752 | astA | MDS_1752 | MDS_1749 | Hypothetical protein. | Arginine succinyltransferase. | 0.629 |
MDS_1752 | astB | MDS_1752 | MDS_1751 | Hypothetical protein. | Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). | 0.732 |
MDS_1752 | astD | MDS_1752 | MDS_1750 | Hypothetical protein. | Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. | 0.730 |
MDS_1752 | astE | MDS_1752 | MDS_1753 | Hypothetical protein. | Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. | 0.844 |
MDS_1754 | MDS_1752 | MDS_1754 | MDS_1752 | L-threonine aldolase. | Hypothetical protein. | 0.506 |
MDS_1754 | astB | MDS_1754 | MDS_1751 | L-threonine aldolase. | Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). | 0.431 |
MDS_1754 | astD | MDS_1754 | MDS_1750 | L-threonine aldolase. | Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. | 0.451 |
MDS_1754 | astE | MDS_1754 | MDS_1753 | L-threonine aldolase. | Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. | 0.530 |
argD | MDS_1752 | MDS_1558 | MDS_1752 | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Hypothetical protein. | 0.424 |
argD | aruF | MDS_1558 | MDS_1748 | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Arginine succinyltransferase. | 0.621 |
argD | astA | MDS_1558 | MDS_1749 | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Arginine succinyltransferase. | 0.631 |
argD | astB | MDS_1558 | MDS_1751 | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). | 0.551 |
argD | astD | MDS_1558 | MDS_1750 | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Succinylglutamic semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. | 0.434 |
argD | astE | MDS_1558 | MDS_1753 | Acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. | 0.537 |
argD-2 | MDS_1752 | MDS_1747 | MDS_1752 | Bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Hypothetical protein. | 0.552 |
argD-2 | aruF | MDS_1747 | MDS_1748 | Bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Arginine succinyltransferase. | 0.857 |
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