Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_1772 | MDS_1773 | MDS_1772 | MDS_1773 | Carbon-phosphorus lyase complex subunit. | Phosphonate metabolism. | 0.999 |
MDS_1772 | MDS_1774 | MDS_1772 | MDS_1774 | Carbon-phosphorus lyase complex subunit. | Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.997 |
MDS_1772 | MDS_1777 | MDS_1772 | MDS_1777 | Carbon-phosphorus lyase complex subunit. | Phosphonate metabolism protein PhnM. | 0.996 |
MDS_1772 | phnC | MDS_1772 | MDS_1767 | Carbon-phosphorus lyase complex subunit. | Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.964 |
MDS_1772 | phnD | MDS_1772 | MDS_1768 | Carbon-phosphorus lyase complex subunit. | Phosphonate ABC transporter, periplasmic phosphonate-binding protein. | 0.978 |
MDS_1772 | phnF | MDS_1772 | MDS_1770 | Carbon-phosphorus lyase complex subunit. | GntR family transcriptional regulator. | 0.982 |
MDS_1772 | phnG | MDS_1772 | MDS_1771 | Carbon-phosphorus lyase complex subunit. | Phosphonate metabolism PhnG. | 0.999 |
MDS_1772 | phnK | MDS_1772 | MDS_1775 | Carbon-phosphorus lyase complex subunit. | Phosphonate C-P lyase system protein PhnK. | 0.997 |
MDS_1772 | phnL | MDS_1772 | MDS_1776 | Carbon-phosphorus lyase complex subunit. | Phosphonate C-P lyase system protein PhnL. | 0.999 |
MDS_1772 | phnN | MDS_1772 | MDS_1778 | Carbon-phosphorus lyase complex subunit. | Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP). | 0.955 |
MDS_1773 | MDS_1772 | MDS_1773 | MDS_1772 | Phosphonate metabolism. | Carbon-phosphorus lyase complex subunit. | 0.999 |
MDS_1773 | MDS_1774 | MDS_1773 | MDS_1774 | Phosphonate metabolism. | Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.999 |
MDS_1773 | MDS_1777 | MDS_1773 | MDS_1777 | Phosphonate metabolism. | Phosphonate metabolism protein PhnM. | 0.996 |
MDS_1773 | phnC | MDS_1773 | MDS_1767 | Phosphonate metabolism. | Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.965 |
MDS_1773 | phnD | MDS_1773 | MDS_1768 | Phosphonate metabolism. | Phosphonate ABC transporter, periplasmic phosphonate-binding protein. | 0.980 |
MDS_1773 | phnF | MDS_1773 | MDS_1770 | Phosphonate metabolism. | GntR family transcriptional regulator. | 0.985 |
MDS_1773 | phnG | MDS_1773 | MDS_1771 | Phosphonate metabolism. | Phosphonate metabolism PhnG. | 0.999 |
MDS_1773 | phnK | MDS_1773 | MDS_1775 | Phosphonate metabolism. | Phosphonate C-P lyase system protein PhnK. | 0.997 |
MDS_1773 | phnL | MDS_1773 | MDS_1776 | Phosphonate metabolism. | Phosphonate C-P lyase system protein PhnL. | 0.999 |
MDS_1773 | phnN | MDS_1773 | MDS_1778 | Phosphonate metabolism. | Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP). | 0.954 |
page 1 of 6