STRINGSTRING
MDS_1804 MDS_1804 MDS_1803 MDS_1803 MDS_4252 MDS_4252 tolA tolA MDS_1802 MDS_1802 MDS_1806 MDS_1806 MDS_0460 MDS_0460 MDS_1805 MDS_1805 MDS_1801 MDS_1801 MDS_1800 MDS_1800 MDS_0098 MDS_0098
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1804TonB-dependent siderophore receptor. (809 aa)    
Predicted Functional Partners:
MDS_1803
Fe3+-siderophore ABC transporter, periplasmic solute-binding protein.
 
  
 0.834
MDS_4252
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.809
tolA
TonB family protein.
  
 
 0.778
MDS_1802
Iron-hydroxamate transporter permease subunit.
 
  
 0.742
MDS_1806
Putative transmembrane sensor.
 
  
 0.709
MDS_0460
TonB family protein.
  
 
 0.705
MDS_1805
Cyclic peptide transporter.
 
  
 0.699
MDS_1801
Extracytoplasmic-function sigma-70 factor.
 
  
 0.673
MDS_1800
Ferric iron reductase.
 
  
 0.667
MDS_0098
Fec operon regulator FecR.
 
  
 0.661
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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