STRINGSTRING
MDS_1845 MDS_1845 MDS_3170 MDS_3170 MDS_1868 MDS_1868 MDS_0958 MDS_0958 MDS_1846 MDS_1846 MDS_3949 MDS_3949 fliS_2 fliS_2 flhF flhF fliS-2 fliS-2 MDS_3950 MDS_3950 MDS_1851 MDS_1851
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1845Sigma-54 dependent transcription regulator. (491 aa)    
Predicted Functional Partners:
MDS_3170
Integral membrane sensor hybrid histidine protein kinase.
  
 
 0.882
MDS_1868
Cobyrinic acid a,c-diamide synthase.
 
 
 0.866
MDS_0958
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.826
MDS_1846
PAS/PAC sensor signal transduction histidine kinase.
 
 0.733
MDS_3949
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 
 0.659
fliS_2
Flagellar protein FliS.
  
  
 0.656
flhF
Flagellar biosynthesis regulator FlhF.
 
  
 0.649
fliS-2
Flagellar protein FliS.
 
  
 0.638
MDS_3950
Multi-sensor hybrid histidine kinase.
  
 
 0.624
MDS_1851
Flagellar assembly protein H.
 
  
 0.613
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.