STRINGSTRING
MDS_1914 MDS_1914 MDS_0177 MDS_0177 MDS_1916 MDS_1916 MDS_0455 MDS_0455 MDS_1354 MDS_1354 MDS_4827 MDS_4827 MDS_1033 MDS_1033 uraH uraH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_1914Permease for cytosine/purine, uracil, thiamine, allantoin. (488 aa)    
Predicted Functional Partners:
MDS_0177
Uracil-xanthine permease.
 
  
 0.690
MDS_1916
Uracil-xanthine permease.
 
  
 0.570
MDS_0455
Dihydroorotase.
  
  
 0.550
MDS_1354
Hypothetical protein.
 
     0.510
MDS_4827
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
  
 0.508
MDS_1033
Uracil-xanthine permease.
  
  
 0.440
uraH
Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.415
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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