Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0455 | MDS_0457 | MDS_0455 | MDS_0457 | Dihydroorotase. | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | 0.995 |
MDS_0455 | MDS_1916 | MDS_0455 | MDS_1916 | Dihydroorotase. | Uracil-xanthine permease. | 0.845 |
MDS_0455 | carA | MDS_0455 | MDS_3926 | Dihydroorotase. | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | 0.991 |
MDS_0455 | carB | MDS_0455 | MDS_3925 | Dihydroorotase. | Carbamoyl phosphate synthase large subunit; Belongs to the CarB family. | 0.992 |
MDS_0455 | purL | MDS_0455 | MDS_3738 | Dihydroorotase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.602 |
MDS_0455 | pyrB | MDS_0455 | MDS_0456 | Dihydroorotase. | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
MDS_0455 | pyrD | MDS_0455 | MDS_3289 | Dihydroorotase. | Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.989 |
MDS_0455 | pyrE | MDS_0455 | MDS_4713 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.890 |
MDS_0455 | pyrF | MDS_0455 | MDS_2038 | Dihydroorotase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.906 |
MDS_0457 | MDS_0455 | MDS_0457 | MDS_0455 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Dihydroorotase. | 0.995 |
MDS_0457 | MDS_1916 | MDS_0457 | MDS_1916 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Uracil-xanthine permease. | 0.849 |
MDS_0457 | carA | MDS_0457 | MDS_3926 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. | 0.871 |
MDS_0457 | carB | MDS_0457 | MDS_3925 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Carbamoyl phosphate synthase large subunit; Belongs to the CarB family. | 0.886 |
MDS_0457 | purL | MDS_0457 | MDS_3738 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.540 |
MDS_0457 | pyrB | MDS_0457 | MDS_0456 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.996 |
MDS_0457 | pyrD | MDS_0457 | MDS_3289 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.848 |
MDS_0457 | pyrE | MDS_0457 | MDS_4713 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.882 |
MDS_0457 | pyrF | MDS_0457 | MDS_2038 | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.989 |
MDS_1916 | MDS_0455 | MDS_1916 | MDS_0455 | Uracil-xanthine permease. | Dihydroorotase. | 0.845 |
MDS_1916 | MDS_0457 | MDS_1916 | MDS_0457 | Uracil-xanthine permease. | Bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase. | 0.849 |
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