STRINGSTRING
MDS_2070 MDS_2070 MDS_2072 MDS_2072 MDS_2071 MDS_2071 MDS_2073 MDS_2073 MDS_4448 MDS_4448 MDS_0402 MDS_0402 MDS_4858 MDS_4858 MDS_4695 MDS_4695 MDS_0400 MDS_0400 MDS_1147 MDS_1147 MDS_0403 MDS_0403
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2070FAD dependent oxidoreductase. (429 aa)    
Predicted Functional Partners:
MDS_2072
Glutamate--putrescine ligase; Belongs to the glutamine synthetase family.
 
  
 0.929
MDS_2071
XRE family transcriptional regulator.
 
  
 0.926
MDS_2073
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.868
MDS_4448
Sarcosine oxidase alpha subunit family protein; Belongs to the GcvT family.
 
 
 0.837
MDS_0402
L-glutamine synthetase.
 
  
 0.803
MDS_4858
L-glutamine synthetase.
 
  
 0.788
MDS_4695
Glutamine synthetase, catalytic region.
 
  
 0.787
MDS_0400
L-glutamine synthetase.
 
  
 0.779
MDS_1147
Putative glutamine amidotransferase.
 
  
 0.709
MDS_0403
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.669
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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