STRINGSTRING
MDS_2078 MDS_2078 MDS_2079 MDS_2079 MDS_4408 MDS_4408 MDS_4783 MDS_4783 MDS_2077 MDS_2077 MDS_2080 MDS_2080 MDS_1017 MDS_1017 MDS_1338 MDS_1338 MDS_3639 MDS_3639 trpS trpS MDS_2946 MDS_2946
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2078Hypothetical protein. (104 aa)    
Predicted Functional Partners:
MDS_2079
Hypothetical protein; Belongs to the UPF0502 family.
       0.706
MDS_4408
Hypothetical protein.
  
     0.641
MDS_4783
Hypothetical protein.
  
     0.582
MDS_2077
MarR family transcriptional regulator.
       0.564
MDS_2080
TetR family transcriptional regulator.
       0.545
MDS_1017
Hypothetical protein.
  
     0.515
MDS_1338
Membrane-bound metal-dependent hydrolase.
  
     0.466
MDS_3639
H-NS family protein MvaT.
  
     0.463
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.453
MDS_2946
Hypothetical protein.
  
     0.414
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.