STRINGSTRING
MDS_2135 MDS_2135 MDS_0312 MDS_0312 MDS_4387 MDS_4387 MDS_0840 MDS_0840 MDS_1198 MDS_1198 MDS_1246 MDS_1246 MDS_3150 MDS_3150 MDS_4794 MDS_4794 MDS_0263 MDS_0263 MDS_4664 MDS_4664 MDS_2136 MDS_2136
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
MDS_2135LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (316 aa)    
Predicted Functional Partners:
MDS_0312
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.726
MDS_4387
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.722
MDS_0840
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.720
MDS_1198
LysR family transcriptional regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.710
MDS_1246
LysR family transcriptional regulator.
  
     0.706
MDS_3150
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.705
MDS_4794
Putative LysR-family regulatory protein.
  
     0.661
MDS_0263
LysR family transcriptional regulator.
  
     0.651
MDS_4664
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.645
MDS_2136
Oxidoreductase, short chain dehydrogenase/reductase family.
 
     0.635
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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