STRINGSTRING
MDS_2281 MDS_2281 MDS_2282 MDS_2282 MDS_2235 MDS_2235 MDS_2283 MDS_2283 MDS_2280 MDS_2280 MDS_2278 MDS_2278 MDS_2279 MDS_2279 MDS_1792 MDS_1792 MDS_2284 MDS_2284
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2281Pirin domain-containing protein; Belongs to the pirin family. (286 aa)    
Predicted Functional Partners:
MDS_2282
OsmC family protein.
  
  
 0.853
MDS_2235
Extradiol ring-cleavage dioxygenase III subunit B.
 
  
 0.718
MDS_2283
Methyl-accepting chemotaxis sensory transducer.
       0.645
MDS_2280
Hypothetical protein.
       0.619
MDS_2278
Hypothetical protein.
       0.481
MDS_2279
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.481
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.454
MDS_2284
Amidohydrolase 2.
       0.417
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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