Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MDS_0348 | MDS_2406 | Putative CheA signal transduction histidine kinase. | Hypothetical protein. | 0.495 |
MDS_0348 | MDS_2469 | Putative CheA signal transduction histidine kinase. | Peptidase S14, ClpP. | 0.773 |
MDS_1230 | MDS_2406 | TraR/DksA family transcriptional regulator. | Hypothetical protein. | 0.533 |
MDS_1230 | MDS_4030 | TraR/DksA family transcriptional regulator. | Hypothetical protein. | 0.530 |
MDS_2406 | MDS_0348 | Hypothetical protein. | Putative CheA signal transduction histidine kinase. | 0.495 |
MDS_2406 | MDS_1230 | Hypothetical protein. | TraR/DksA family transcriptional regulator. | 0.533 |
MDS_2406 | MDS_2407 | Hypothetical protein. | Protease. | 0.529 |
MDS_2406 | MDS_2408 | Hypothetical protein. | Collagenase. | 0.573 |
MDS_2406 | MDS_2409 | Hypothetical protein. | Hypothetical protein. | 0.523 |
MDS_2406 | MDS_2469 | Hypothetical protein. | Peptidase S14, ClpP. | 0.547 |
MDS_2406 | MDS_4030 | Hypothetical protein. | Hypothetical protein. | 0.406 |
MDS_2407 | MDS_2406 | Protease. | Hypothetical protein. | 0.529 |
MDS_2407 | MDS_2408 | Protease. | Collagenase. | 0.991 |
MDS_2407 | MDS_2409 | Protease. | Hypothetical protein. | 0.975 |
MDS_2408 | MDS_2406 | Collagenase. | Hypothetical protein. | 0.573 |
MDS_2408 | MDS_2407 | Collagenase. | Protease. | 0.991 |
MDS_2408 | MDS_2409 | Collagenase. | Hypothetical protein. | 0.991 |
MDS_2409 | MDS_2406 | Hypothetical protein. | Hypothetical protein. | 0.523 |
MDS_2409 | MDS_2407 | Hypothetical protein. | Protease. | 0.975 |
MDS_2409 | MDS_2408 | Hypothetical protein. | Collagenase. | 0.991 |
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