STRINGSTRING
MDS_2412 MDS_2412 MDS_2413 MDS_2413 MDS_2410 MDS_2410 MDS_1900 MDS_1900 MDS_2516 MDS_2516 MDS_2423 MDS_2423 MDS_2411 MDS_2411 MDS_2459 MDS_2459 MDS_2470 MDS_2470 MDS_2426 MDS_2426 MDS_2460 MDS_2460
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2412Ku domain-containing protein. (286 aa)    
Predicted Functional Partners:
MDS_2413
ATP-dependent DNA ligase.
 
  
 0.992
MDS_2410
Hypothetical protein.
 
    0.711
MDS_1900
DNA topoisomerase.
 
    0.702
MDS_2516
ATP-dependent DNA ligase.
 
  
 0.642
MDS_2423
Hypothetical protein.
 
     0.582
MDS_2411
Hypothetical protein.
       0.526
MDS_2459
Outer membrane protein-like protein.
 
    0.474
MDS_2470
Hypothetical protein.
 
    0.468
MDS_2426
Short-chain dehydrogenase/reductase SDR.
 
    0.433
MDS_2460
Hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
    0.404
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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