STRINGSTRING
MDS_2427 MDS_2427 MDS_2473 MDS_2473 MDS_2561 MDS_2561 MDS_2428 MDS_2428 MDS_0180 MDS_0180 MDS_2446 MDS_2446 MDS_2426 MDS_2426 MDS_2448 MDS_2448 MDS_3474 MDS_3474 MDS_2469 MDS_2469 MDS_2829 MDS_2829
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2427Hypothetical protein. (56 aa)    
Predicted Functional Partners:
MDS_2473
Hypothetical protein.
 
  
 0.868
MDS_2561
DNA-binding transcriptional activator OsmE.
  
    0.745
MDS_2428
Hemerythrin HHE cation binding domain-containing protein.
  
  
 0.736
MDS_0180
Hypothetical protein.
  
    0.665
MDS_2446
Integral membrane protein-like protein.
  
     0.594
MDS_2426
Short-chain dehydrogenase/reductase SDR.
  
    0.565
MDS_2448
Endonuclease/exonuclease/phosphatase.
  
    0.552
MDS_3474
Hypothetical protein.
  
     0.522
MDS_2469
Peptidase S14, ClpP.
 
   
 0.502
MDS_2829
Membrane protein AbrB duplication.
  
     0.501
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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