STRINGSTRING
MDS_2475 MDS_2475 MDS_2476 MDS_2476 MDS_3555 MDS_3555 MDS_1179 MDS_1179 MDS_0371 MDS_0371 MDS_4168 MDS_4168 MDS_2477 MDS_2477 rubA rubA MDS_1291 MDS_1291
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2475Hypothetical protein. (239 aa)    
Predicted Functional Partners:
MDS_2476
Hypothetical protein.
 
     0.950
MDS_3555
Hypothetical protein.
 
 
 0.651
MDS_1179
Hypothetical protein.
  
    0.582
MDS_0371
CDP-6-deoxy-delta-3,4-glucoseen reductase.
  
 
 0.579
MDS_4168
Benzoate dioxygenase, ferredoxin reductase component.
  
 
 0.579
MDS_2477
Acetyltransferase.
 
     0.517
rubA
Rubredoxin/rubredoxin reductase.
  
  
 0.483
MDS_1291
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.456
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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