STRINGSTRING
MDS_2500 MDS_2500 MDS_2499 MDS_2499 MDS_1618 MDS_1618 MDS_2501 MDS_2501 MDS_3045 MDS_3045 MDS_1620 MDS_1620 MDS_2498 MDS_2498 MDS_4798 MDS_4798 MDS_1175 MDS_1175 MDS_1616 MDS_1616 MDS_2328 MDS_2328
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2500Hypothetical protein. (278 aa)    
Predicted Functional Partners:
MDS_2499
Hypothetical protein.
 
  
 0.989
MDS_1618
Hypothetical protein.
 
  
 0.896
MDS_2501
Hypothetical protein.
 
     0.861
MDS_3045
Hemolysin-type calcium-binding repeat-containing protein.
   
    0.761
MDS_1620
DoxX family protein.
 
  
 0.652
MDS_2498
Hypothetical protein.
       0.624
MDS_4798
Diguanylate cyclase/phosphodiesterase.
   
    0.605
MDS_1175
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
   
    0.571
MDS_1616
Hypothetical protein.
 
  
 0.563
MDS_2328
DoxX family protein.
  
  
 0.501
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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