STRINGSTRING
MDS_2513 MDS_2513 MDS_2304 MDS_2304 MDS_2533 MDS_2533 MDS_3655 MDS_3655 MDS_3031 MDS_3031 MDS_3519 MDS_3519 MDS_4725 MDS_4725 MDS_4908 MDS_4908 MDS_4448 MDS_4448 MDS_4449 MDS_4449 MDS_4447 MDS_4447
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_2513Putative transcriptional regulator. (349 aa)    
Predicted Functional Partners:
MDS_2304
AraC family transcriptional regulator.
  
   0.749
MDS_2533
Transcriptional regulator, AraC family.
  
   0.742
MDS_3655
AraC family transcriptional regulator.
  
   0.728
MDS_3031
AraC family transcriptional regulator.
  
   0.672
MDS_3519
Transcriptional regulator.
  
     0.671
MDS_4725
AraC family transcriptional regulator.
  
   0.664
MDS_4908
AraC family transcriptional regulator.
  
   0.649
MDS_4448
Sarcosine oxidase alpha subunit family protein; Belongs to the GcvT family.
 
     0.638
MDS_4449
Sarcosine oxidase delta subunit family protein.
 
    0.638
MDS_4447
Sarcosine oxidase gamma subunit family protein.
 
    0.634
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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