Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0012 | MDS_0071 | MDS_0012 | MDS_0071 | Ser/Thr protein phosphatase, putative. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.657 |
MDS_0012 | MDS_1831 | MDS_0012 | MDS_1831 | Ser/Thr protein phosphatase, putative. | methionyl-tRNA formyltransferase-like protein. | 0.724 |
MDS_0012 | MDS_2623 | MDS_0012 | MDS_2623 | Ser/Thr protein phosphatase, putative. | Protein kinase. | 0.785 |
MDS_0012 | MDS_3950 | MDS_0012 | MDS_3950 | Ser/Thr protein phosphatase, putative. | Multi-sensor hybrid histidine kinase. | 0.478 |
MDS_0012 | MDS_4132 | MDS_0012 | MDS_4132 | Ser/Thr protein phosphatase, putative. | Protein kinase. | 0.500 |
MDS_0012 | fmt | MDS_0012 | MDS_0072 | Ser/Thr protein phosphatase, putative. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.724 |
MDS_0071 | MDS_0012 | MDS_0071 | MDS_0012 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ser/Thr protein phosphatase, putative. | 0.657 |
MDS_0071 | MDS_1831 | MDS_0071 | MDS_1831 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | methionyl-tRNA formyltransferase-like protein. | 0.862 |
MDS_0071 | MDS_2623 | MDS_0071 | MDS_2623 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Protein kinase. | 0.828 |
MDS_0071 | MDS_3950 | MDS_0071 | MDS_3950 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Multi-sensor hybrid histidine kinase. | 0.554 |
MDS_0071 | MDS_4132 | MDS_0071 | MDS_4132 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Protein kinase. | 0.805 |
MDS_0071 | fmt | MDS_0071 | MDS_0072 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.969 |
MDS_1831 | MDS_0012 | MDS_1831 | MDS_0012 | methionyl-tRNA formyltransferase-like protein. | Ser/Thr protein phosphatase, putative. | 0.724 |
MDS_1831 | MDS_0071 | MDS_1831 | MDS_0071 | methionyl-tRNA formyltransferase-like protein. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.862 |
MDS_1831 | MDS_2623 | MDS_1831 | MDS_2623 | methionyl-tRNA formyltransferase-like protein. | Protein kinase. | 0.814 |
MDS_1831 | MDS_4132 | MDS_1831 | MDS_4132 | methionyl-tRNA formyltransferase-like protein. | Protein kinase. | 0.814 |
MDS_2622 | MDS_2623 | MDS_2622 | MDS_2623 | Nitrite transporter. | Protein kinase. | 0.944 |
MDS_2622 | MDS_2624 | MDS_2622 | MDS_2624 | Nitrite transporter. | Assimilatory nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.988 |
MDS_2622 | MDS_4132 | MDS_2622 | MDS_4132 | Nitrite transporter. | Protein kinase. | 0.414 |
MDS_2622 | nirD | MDS_2622 | MDS_2625 | Nitrite transporter. | Assimilatory nitrite reductase. | 0.984 |
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